Flagship Inn

When you book a room with us, you’ll get more than just a bed to lay your head. You’ll experience…

Affordable Comfort & Service

We pride ourselves on attentive and hospitable service and comfort at an affordable cost.

Our heated outdoor pool, complimentary breakfast, pet-friendly rooms, and family suites are often what draw guests in, but our seasoned staff and convenient location are what brings them back time and time again.

Convenient Location

Our property is adjacent to the many walking trails at Penny Lake Preserve (connected by a footbridge) and just a 0.6 mile stroll down the roadside sidewalk to the water’s edge in the mouth of the harbor. If you’re traveling with kids or are a kid at heart, you’ll love the outdoor playground equipment and nearby sports fields and tennis courts.

Whether you’re visiting the Coastal Maine Botanical Gardens, looking forward to eating lobster at LobsterFest, or checking out all the boats at WindJammer or HarborFest, we’re here to welcome and serve you during your stay in Boothbay Harbor, Maine.

Amenities & Accommodations

Our award-winning Boothbay Harbor hotel offers 80+ rooms and is open year-round. Rooms range from standard double rooms to family suites and offer amenities such as cable TV with HBO, mini-fridges, and more.

All guests are invited to use our outdoor heated pool (seasonal) and enjoy a complimentary continental breakfast (daily).

Flagship Inn & Suites is conveniently located in Boothbay Harbor, Maine, and has designated handicap accessible and pet-friendly rooms, is perfect for family vacations, romantic getaways, and business travels.